People

Kenneth Acosta

Rutgers University - New Brunswick

Programs

CAREERS, ACCESS CSSN

Skills

bioinformatics bash python r scripting conda pip unix-environment ssh vpn biology github genomics sftp

Adedeji Adekunle

Rutgers University, Camden

Programs

CAREERS

Skills

data-transfer data-management hardware cpu-architecture project-management community-outreach

Mohsen Ahmadkhani

HPC Software Development Engineer

Programs

CCMNet, ACCESS CSSN

Skills

Rebecca Belshe

Arizona State University

Programs

Campus Champions, CCMNet

Skills

documentation tickets reporting proposal-request errors ai plotting vectorization visualization parameter-sweeps big-data computer-graphics data-analysis globus github-pages github file-transfer data-sharing data-transfer data-wrangling benchmarking checkpoint debugging memory optimization parallelization performance-tuning profiling scaling pytorch tensorflow open-ondemand science-gateway xdmod cluster cluster-support gpu distributed-computing htc nvidia bash cleanup environment-modules git modules scripting ssh tmux vim vm ACCESS ACCESS-account ACCESS-allocations ACCESS-credits allocations-proposal ACCESS-website affinity-group jetstream stampede2 stampede3 abstract affiliations citation community-outreach management professional-development mentorship project-management workforce-development training software-carpentry research-grants research-facilitation publication-database proposal-development xsede anaconda c c++compiling conda gcc r matlab sas rstudio-server spss stata batch-jobs core-hours job-accounting job-array job-failure job-sizing job-submission slurm scheduling schedulers resources data-science psychology oceanography dependencies

Wesley Brashear

Texas A&M University

Programs

ACCESS CSSN, Campus Champions

Skills

r python bioinformatics biology genomics

Carrie Brown

Pennsylvania State University

Programs

CAREERS, ACCESS CSSN, CCMNet

Skills

cleanup data-wrangling github job-array research-facilitation training community-outreach workforce-development bioinformatics genomics github-pages python r sas scripting software-carpentry distributed-computing

David Carlson

SUNY at Stony Brook

Programs

ACCESS CSSN

Skills

gatk trinity bash ookami research-facilitation python r slurm bioinformatics genomics biology singularity

Frédéric Chevalier

Texas Biomedical Research Institute

Programs

Campus Champions

Skills

Bala Desinghu

Harvard University

Rutgers University

Programs

ACCESS CSSN, Campus Champions, CAREERS, Northeast

Skills

proposal-request ai big-data data-analysis deep-learning dft image-processing machine-learning monte-carlo neural-networks parameter-sweeps plotting vectorization visualization random-numbers cloud-computing cloud-storage github globus s3 sftp data-management data-transfer data-sharing optimization parallelization scaling benchmarking bioinformatics molecular-dynamics natural-language-processing opencv tensorflow pytorch gaussian gromacs computational-chemistry data-science materials-science quantum-mechanics open-ondemand distributed-computing unix-environment batch-jobs pre-emption schedulers bash environment-modules git screen ssh vim professional-development proposal-development research-facilitation research-grants software-carpentry training anaconda c c++compiling conda fortran jupyterhub mathematica matlab programming python r rstudio-server scikit-learn putty vnc vpn containers dependencies docker pip podman singularity software-installation quantum-computing api job-array slurm sge pbs community-outreach

Christina Divoll

Tufts University

Programs

Campus Champions, ACCESS CSSN

Skills

Nick Dusek

North Dakota State University

Programs

Campus Champions

Skills

Jeff Falgout

United States Geological Survey

Programs

Campus Champions, RMACC

Skills

William Feng

Rutgers University-New Brunswick

Programs

CAREERS

Skills

genomics biology java r python programming programming-best-practices sql bioinformatics data-analysis

Charles Forsyth

University of California, Riverside

Programs

Campus Champions

Skills

Jacob Fosso Tande

North Carolina State University at Raleigh

Computational Scientist

Programs

Campus Champions

Skills

alex Gutierrez

California State University-Los Angeles

Programs

ACCESS CSSN

Skills

Rob Harbert

Stonehill College

Assistant Professor of Biology and Bioinformatics

Programs

Northeast

Skills

anaconda biology github big-data bioinformatics genomics gis r sas distributed-computing batch-jobs sftp ssh open-ondemand

Jordan Hayes

University of California - Riverside

Programs

Campus Champions

Skills

bash anaconda singularity modules gpfs slurm duo compiling conda jupyterhub mpi pip rstudio-server jekyll xml big-data data-management data-transfer file-formats aws cyverse training software-carpentry bioinformatics fastx gatk genomics smrt trinity gaussian gromacs amber charmm namd pytorch scikit-learn comsol atlas git github github-pages programming programming-best-practices cleanup version-control c pthreads c++fortran java python r sql xsede scheduling job-array pending-jobs pre-emption api batch-jobs checkpoint dmtcp docker kubernetes distributed-computing environment-modules parameter-sweeps cpu-bound scripting tmux screen terminal-emulation-and-window-management administering-hpc cluster-management cgroups prometheus cluster-support file-transfer globus x11 vpn ssh smb sftp samba rdp putty vnc federated-authentication cilogon hardware infiniband interconnect nvidia hpc-cluster-build gpu acls hpc-storage cifs nfs spectrum-scale networking dtn ethernet firewall sciencedmz tcp schedulers sge pbs encryption key-management software-installation easybuild spark unix-environment vim vm

Chris Hemme

University of Rhode Island

Bioinformatics Core Director

Programs

CAREERS

Skills

big-data bioinformatics r data-analysis anaconda genomics biology

Russell Hofmann

Internet2

Programs

ACCESS CSSN, CCMNet

Skills

data-analysis machine-learning dft scaling pytorch gromacs gaussian molecular-dynamics computational-chemistry data-science genomics research-facilitation python spark spack kubernetes training

Xiaoqin Huang

Rice University

Programs

ACCESS CSSN

Skills

ACCESS-account ACCESS-credits adding-users affinity-group allocations-extension allocations-proposal anvil bridges-2 darwin delta documentation expanse rockfish stampede2 transfer-su xdmod tickets data-analysis deep-learning dft machine-learning neural-networks openstack globus github benchmarking checkpoint debugging memory optimization parallelization performance-tuning profiling scaling scripting amber bioinformatics charmm gamess gaussian gromacs lammps molecular-dynamics namd pytorch tensorflow biology computational-chemistry data-science genomics quantum-mechanics open-ondemand cgroups condo gpu nvidia batch-jobs schedulers job-array bash git pthreads ssh proposal-development research-facilitation research-grants community-outreach anaconda c c++compiling conda cuda fortran jupyterhub mpi openmp openmpi programming python containers dependencies easybuild docker interactive-mode pip singularity software-installation

Xiaoluo Jiao

Columbia University, Mailman School of Public Health

Programs

CAREERS

Skills

sas data-wrangling data-management data-reproducibility biology bioinformatics genomics machine-learning psychology git github programming cleanup r

Chimdia Kabuo

Indiana University-Purdue University Fort Wayne

Programs

ACCESS CSSN

Skills

Skills

Organization

Program