biology

Mentors and Regional Facilitators

Name	Region	Skills	Interests
Alyssa Pivirotto	ACCESS CSSN, Campus Champions	bash bioinformatics biology conda data-analysis data-science genomics github more...	arcgis machine-learning
David Carlson	ACCESS CSSN	bash bioinformatics biology gatk genomics ookami python r more...
diana Trotman	CAREERS	benchmarking biology cloud-open-source cloudlab community-outreach computational-chemistry cybersecurity data-analysis more...	benchmarking bioinformatics biology cleanup cloud-commercial computational-chemistry containers cybersecurity more...
Daniel Morales	Campus Champions	ACCESS ACCESS-allocations ACCESS-credits adding-users allocation-management anaconda bash batch-jobs more...	ACCESS ACCESS-allocations allocation-management bioinformatics biology community-outreach conda deep-learning more...
Deborah Penchoff	Campus Champions	abstract ACCESS ACCESS-account adding-users affiliations ai allocation-management allocation-time more...
Diana Toups Dugas	RMACC, SWEETER, Campus Champions	bioinformatics biology genomics proposal-development research-facilitation software-carpentry training workforce-development
Elie Alhajjar	ACCESS CSSN, CCMNet	biology c++ community-outreach data-science julia mathematica matlab professional-development more...	ai big-data biology c++ community-outreach data-analysis data-science deep-learning more...
Feseha Abebe-Akele	CCMNet	abstract ACCESS ACCESS-account ACCESS-allocations ACCESS-credits ACCESS-website account adding-users more...
Jeffrey Weekley	Campus Champions	administering-hpc archiving biology community-outreach condo containers cybersecurity data-compliance more...
Jason Wells	ACCESS CSSN, Campus Champions	administering-hpc api bash batch-jobs biology cluster-management cluster-support comsol more...
Amy Koshoffer	Campus Champions	biology data-lifecycle data-management doi file-formats workflow	archiving backup biology data-lifecycle data-management doi file-formats file-transfer more...
shuai liu	ACCESS CSSN	ai anaconda azure big-data bioinformatics biology containers data-analysis more...
Nicholas Danes	Campus Champions, MINES	anaconda biology compiling cpu-bound distributed-computing fluid-dynamics fortran job-array more...	ai aws azure benchmarking big-data c c++ deep-learning more...
Nicholas Panchy	Campus Champions	bash bioinformatics biology conda easybuild genomics modules open-ondemand more...
Rob Harbert	Northeast	anaconda batch-jobs big-data bioinformatics biology distributed-computing genomics gis more...
Xiaoqin Huang	ACCESS CSSN	ACCESS-account ACCESS-credits adding-users affinity-group allocations-extension allocations-proposal amber anaconda more...	ACCESS-credits ACCESS-website adding-users affinity-group allocations-extension allocations-proposal amber anaconda more...
William Lai	ACCESS CSSN	administering-hpc ai anaconda archiving backup bash bioinformatics biology more...	administering-hpc ai archiving bash benchmarking big-data bioinformatics biology more...

Affinity Groups

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Announcements

Title	Date
Ookami Webinar	02/14/24
Open Call: Minisymposia for PASC24	10/05/23

Upcoming Events & Trainings

No events or trainings are currently scheduled.

Topics from Ask.CI

Knowledge Base Resources

Title	Category	Tags	Skill Level
Awesome Jupyter Widgets (for building interactive scientific workflows or science gateway tools)	Learning	ai, computer-graphics, plotting, visualization, big-data, data-analysis, deep-learning, image-processing, machine-learning, monte-carlo, neural-networks, data-sharing, data-lifecycle, data-management, data-management-software, data-reproducibility, github, astrophysics, data-science, novel-accelerators, computational-chemistry, genomics, materials-science, gravitational-waves, oceanography, particle-physics, physiology, psychology, quantum-computing, quantum-mechanics, biology, open-ondemand, science-gateway, c++, jupyterhub, python	Beginner, Intermediate, Advanced
Data Analysis with R for Educators	Video	data-analysis, data-science, psychology, biology, training, workforce-development, r	Beginner
How the Little Jupyter Notebook Became a Web App: Managing Increasing Complexity with nbdev	Learning	data-sharing, data-management-software, data-reproducibility, github, workflow, astrophysics, data-science, novel-accelerators, computational-chemistry, genomics, materials-science, gravitational-waves, oceanography, particle-physics, physiology, psychology, quantum-computing, quantum-mechanics, biology, science-gateway, software-carpentry, jupyterhub, programming, python	Beginner, Intermediate, Advanced

All Resources with this tag

Engagements

There are no Engagements associated with this topic. View All Engagements.

People with Expertise

Jason Wells

Harvard University

Programs

ACCESS CSSN, Campus Champions

Roles

research computing facilitator, cssn

Expertise

administering-hpc

api

bash

batch-jobs

biology

+53 more tags

masoud keramati

Northeastern University

Programs

ACCESS CSSN

Roles

student-facilitator, cssn

Expertise

administering-hpc

allocation-management

amber

bash

batch-jobs

+18 more tags

Amy Koshoffer

University of Cincinnati-Main Campus

Programs

Campus Champions

Roles

research computing facilitator

Expertise

biology

data-management

doi

file-formats

+1 more tags

People with Interest

Matt Ferguson

Boise State University

Programs

At-Large

Roles

researcher/educator, cssn

picture of Matt Ferguson

Interests

access

access-account

access-allocations

access-credits

access-website

+72 more tags

Kaitlyn Varela

Programs

ACCESS CSSN

Roles

student-facilitator

Photo of Kaitlyn Varela

Interests

anaconda

big-data

biology

community-outreach

computational-chemistry

+7 more tags

William Lai

Cornell University

Programs

ACCESS CSSN

Roles

mentor, researcher/educator, research computing facilitator, research software engineer, ci systems engineer, Consultant

William KM Lai

Interests

administering-hpc

ai

archiving

bash

benchmarking

+67 more tags