Vikram Gazula

University of Kentucky

Affinity Group Leader, KB PM, CCMNet PM, CCMNet

Interests

cluster-support

hpc-cluster-architecture

Skills

ACCESS-allocations

allocation-management

allocation-users

allocations-extension

allocations-proposal

exchange-request

Projects

- Data Presentation for the Living Bridge

- Data Visualizations Using the Microsoft HoloLens

- Light Propagation in a Temporal Focusing Microscope using Matlab

- Unsupervised learning of topologically ordered phases of matter

- Parallel computing for interactions between fluids and flexible structures with application to suspended longline aquaculture farms

- Student-Developed HPC Cluster for Active Learning

- Student-led Development of Open Source Materials for Hadoop

- Machine learning for material property prediction

- Individual Based Modeling of Diamondback Terrapins

- Multiscale HPC Modeling, Tutorials and examples

- A GIS based model for wildlife conservation in Sri Lanka

- C++/17/14 Migration of Path Integral Quantum Monte Carlo Software

- The foundation of terrestrial life: Inferring a total-evidence timeline of vascular plant evolution

- Understanding Mechanical Properties of Bio-interfaces with HPC Molecular Simulations

- Developing Computational Labs for Upper Level Physical Chemistry II Course

- Using station data and downscaled reanalysis to assess the occurrence of extreme weather

- BTLE Beaconing to Track Objects

- Genetics and Big Data

- CI Learning Resource Repository

- Using Genetic Algorithms and Support Vector Machines in Forest Mapping

- Large-area Enhanced Forest Inventory modeled on 3-D Airborne Laser Scanning data

- Kerr Black Hole Gravitational Lensing

- LOBO Fleet Monitoring

- Grey matter density, heredity, and psychotic disorders with alcohol misuse: Moving toward new diagnostic conceptualization through biotypes.

- Portal Development

- UVM Art and AI Initiative

- Onboarding Interdisciplinary Scientists to a GPU Based Cluster in Vermont

- Using Agent Based Models on small world networks to understand disease transmission

- Using distributed computing to equilibrate Monte Carlo simulations

- Tracing Oceanic Pathways using High Resolution Model Output

- Research Computing "helpdesk"

- Transient cooling of composite spherical moving droplet at high temperature with phase change and non-homogeneous boundary conditions

- Genome Sequencing of the Bornean Rock Frog

- Modeling Stellar Companions in SDSS

- Detecting and Characterizing RR Lyrae and Other Variable Stars in KELT

- Physical Oncology

- Modeling Atomic-Scale Processes in Crystalline Materials

- Simulations of Stochastically Fluctuating Hyperfine Interactions

- Incorporating Hytools into the current image processing pipeline to produce better vegetation maps that will account for radiometric signals and will parallelize workflow

- Deep convolutional neural networks (dCNN) for image segmentation, instance labeling, and tracking.

- Analyzing Pathogenic Clinical Isolates Genomes to Identify Horizontal Gene Transfer of Antibiotic-Resistance Genes

- Model Mie scattering and light propagation through a high scattering medium using Monte Carlo simulation

- Deep learning for biomedical image analysis

- Solvation Shell and Ion Pair Species Geometries and Energetics of Magnesium and Zinc Ions

- Optimization of Mouse Social Behavior Data Analyses Pipeline

- Deep Learning High-Resolution Land Cover Mapping for Vermont

- Properties of Atomic Clusters

- Physical chemistry studies of environmental pollutant transformations: SIMION modeling of ion behavior in an electric field

- Parallel analysis of variants in multiple bear genomes: algorithmic solutions

- Hybrid systems and LIFE methods for Mycobacterium tuberculosis

- Analyzing NJ COVID-19 responses with Control theory, extending a study from earlier this year.

- Electrostatics of the GABA(A) receptor pore

- Amsterdam Modeling Suite Software Usage on Penn State’s Roar Computer Clusters

- Benchmarking Locally-Developed HPC Resources

- An optimized search algorithm for gravitational waves from post-merger remnants

- Project WiCCED ML

- Utility poles Geo-Localization and Risk Estimation using Deep Learning

- Big Data Portal For Sharing Real-world Bioinformatics Data Sets to the Public Domain

- Assembly and Taxonomic Profiling of Metagenomic Sequences using Deep Learning

- Uncertainty Quantification for Urban Air Quality Modeling in Clermont-Ferrand, France

- Computational Simulation of One-Dimensional Porous Polymers

- USD CI Improvements to Advanced Chemistry and Neuroscience Research

- Establish Computational Analysis Infrastructure for the CCRI 16-inch Telescope.

- UVM Art + AI Research Group Phase 2 (2021)

- High Performance Computing vs Quantum Computing for Neural Networks supporting Artificial Intelligence

- AMD GPU-accelerated design tools for creating novel lifeforms

- Action of Hecke operators on spaces of modular forms

- Metagenomic analysis to identify gene clusters associated with IgA production

- Mo: SEMO - Research Computing Program Development

- OK: SWOSU - Enhancing Course Curriculum using HPC

- OK: UCO - Research Cyberinfrastructure Growth

- Simulating 21st century boreal forests and fire with a state-of-the-art process-based model

- US Tax Code to Natural Language Parsable Data for Programming Languages

- Statistical Analysis of criminal cases in the United States District Court of Puerto Rico

- Simulate and design “xenobots”, on the AMD platform

- GPN Women in HPC Chapter

- Host-symbiont population genomics - analyzing the intraspecific variability of methanogenic archaeal endosymbionts of genus Methanocorpusculum hosted by a marine anaerobic ciliate Metopus sp. (Metopida)

- Using Long Short Term Memory to Obtain Particle Attributes during the Encapsulation Process of High Temperature Phase Change Materials

- Bearing Condition Monitoring using Machine Learning

- Flexible Material Handling using a Vision-Guided Industrial Robot

- Developing Portable and Reusable Computational Biology Modules

- Calculation of Polymer Hydrophobicity

- Understanding Covid-19 Pandemic through Social Media Discussion

- Investigating the Association between Environmental Characteristics and Psychological Well-Being

- Optimization and Parallelization of A Numerical Gravitational-Wave Model

- Learning dynamical systems with GPU-enabled scientific machine learning

- Delaware Microbiome Mapping and Database Development

- High throughput Python pipeline to identify Horizontal Gene Transfer

- Developing subject-specific models for the study of traumatic brain injury

- Coral Genomics: An assessment of metabolic pathways and genes influencing coral bleaching. Implications for the development of hydra as a model organism.

- Deep-learning facilitated microscopy for the dissection of durable resistance to plant disease.

- Predictive Simulation of Pulsed Electric Field Exposure Effects on Vegetable Tissues and Bacterial Suspensions

- Vector Representation with a Finance Corpus

- Developing deep learning algorithms to analyze Raman spectral data for brain cancer diagnosis

- Medical Diagnostics of Chest X-Ray Images with Deep Convolutional Neural Networks (CNN)

- Performance Benchmarks and Optimizations of a Gravitational-Wave Simulation Software

- Detecting Covid-19 Misinformation on Social Media

- Expanding computational resources for gravitational wave detection pipelines in medium-latency and beyond

- Bias and Fairness in Machine Learning: Identifying Bias

- Natural Language Processing of a Low Resource Language (Igbo, an African Language)

- Develop a data portal for the organization of molecular and imaging data

- Transformer-Models for Translating Tax Code

- Searching for Signals of Cosmic Anisotropy

- Digital Infrastructure for "The North Woods Project"

- Remote sensing data management for large-area forest mapping projects

- Gravitational-wave Inference with Waveform Uncertainty

- Bias and Fairness in Machine Learning: Mitigating Bias with unstructured data

- Novel Transformer based methods for Automatic Classification and Quantification of Stromule Dynamics from Microscopy Images

- Mapping mass and radius of compact objects to neutron star equation of state or boson star scalar potential

- A Longitude Study of Global Warming Discussion on Social Media

- Steered Molecular Dynamics Simulations on Human beta Defensin Crossing Model Bacterial Lipid Membranes

- Developing machine learning interatomic potentials for classical molecular dynamics simulations of complex perovskites

- Effects of wind-wave misalignment on air-sea momentum flux and drag coefficient

- Quantum mechanical simulation of fluorine-containing biomolecules

- Numerical simulation of earthquake cycles on oceanic transform faults

- Waveform Systematics for Black Hole Binary Mergers Models

- Does HPC Offer Advantages in Metabolic Network Modeling, Simulation and Optimization?

- Computational pipelines for the analysis of plastic-degrading genes

- Biogeochemical cycling consequences due to the impacts on the cellular response to warming oceans

- Improving earthquake detection and localization with deep learning

- An Evaluation of Methods for Handling Missing Data in Randomized Controlled Trials with Omitted Moderation Effects

- Development of personalized healthy food incentives to improve diet and cardiovascular risk

- Ultrafast Spectral Energy Distribution Modeling of Galaxies using GPUs

- Improving habitat suitability models to understand how mesophotic coral reef distribution will respond to climate change

- Statistical Analysis of criminal cases in the United States District Court of Puerto Rico

- Training Program to Study the Computation of Molecular Reaction Mechanisms using Gaussian on High Performance Computing (HPC) Systems

- Discovering the Structure, Function, and Evolution of Sirtuins and Associated Proteins in Aiptasia: A Deep Learning and Integrative Genomics Approach

- Mental Health and TikTok

- Framework for Reduction of Ambiguity in Text Data from Generative AI

- Training Program to Study Text Data Analytics on HPC Systems

- Gender GAP in bankruptcy filings

- Comparative Analysis of Foreign Direct Investments and Remittances to Five English-Speaking West African Countries Using Statistical, Machine Learning and Deep learning Models

- Consumer reaction to inflation news: simulation analysis of stress in response to the news language

- Waveform Systematics for Black Hole Binary Mergers Models (extension)

- Characterization of 3D organelle motion using curve fitting and clustering by unsupervised machine learning

- Neural network surrogate models of gravitational waveforms

- Data Presentation for the Living Bridge

- Data Visualizations Using the Microsoft HoloLens

- Light Propagation in a Temporal Focusing Microscope using Matlab

- Unsupervised learning of topologically ordered phases of matter

- Parallel computing for interactions between fluids and flexible structures with application to suspended longline aquaculture farms

- Student-Developed HPC Cluster for Active Learning

- Student-led Development of Open Source Materials for Hadoop

- Machine learning for material property prediction

- Individual Based Modeling of Diamondback Terrapins

- Multiscale HPC Modeling, Tutorials and examples

- A GIS based model for wildlife conservation in Sri Lanka

- C++/17/14 Migration of Path Integral Quantum Monte Carlo Software

- The foundation of terrestrial life: Inferring a total-evidence timeline of vascular plant evolution

- Understanding Mechanical Properties of Bio-interfaces with HPC Molecular Simulations

- Developing Computational Labs for Upper Level Physical Chemistry II Course

- Using station data and downscaled reanalysis to assess the occurrence of extreme weather

- BTLE Beaconing to Track Objects

- Genetics and Big Data

- CI Learning Resource Repository

- Using Genetic Algorithms and Support Vector Machines in Forest Mapping

- Large-area Enhanced Forest Inventory modeled on 3-D Airborne Laser Scanning data

- Kerr Black Hole Gravitational Lensing

- LOBO Fleet Monitoring

- Grey matter density, heredity, and psychotic disorders with alcohol misuse: Moving toward new diagnostic conceptualization through biotypes.

- Portal Development

- UVM Art and AI Initiative

- Onboarding Interdisciplinary Scientists to a GPU Based Cluster in Vermont

- Using Agent Based Models on small world networks to understand disease transmission

- Using distributed computing to equilibrate Monte Carlo simulations

- Tracing Oceanic Pathways using High Resolution Model Output

- Research Computing "helpdesk"

- Transient cooling of composite spherical moving droplet at high temperature with phase change and non-homogeneous boundary conditions

- Genome Sequencing of the Bornean Rock Frog

- Modeling Stellar Companions in SDSS

- Detecting and Characterizing RR Lyrae and Other Variable Stars in KELT

- Physical Oncology

- Modeling Atomic-Scale Processes in Crystalline Materials

- Simulations of Stochastically Fluctuating Hyperfine Interactions

- Incorporating Hytools into the current image processing pipeline to produce better vegetation maps that will account for radiometric signals and will parallelize workflow

- Deep convolutional neural networks (dCNN) for image segmentation, instance labeling, and tracking.

- Analyzing Pathogenic Clinical Isolates Genomes to Identify Horizontal Gene Transfer of Antibiotic-Resistance Genes

- Model Mie scattering and light propagation through a high scattering medium using Monte Carlo simulation

- Deep learning for biomedical image analysis

- Solvation Shell and Ion Pair Species Geometries and Energetics of Magnesium and Zinc Ions

- Optimization of Mouse Social Behavior Data Analyses Pipeline

- Deep Learning High-Resolution Land Cover Mapping for Vermont

- Properties of Atomic Clusters

- Physical chemistry studies of environmental pollutant transformations: SIMION modeling of ion behavior in an electric field

- Parallel analysis of variants in multiple bear genomes: algorithmic solutions

- Hybrid systems and LIFE methods for Mycobacterium tuberculosis

- Analyzing NJ COVID-19 responses with Control theory, extending a study from earlier this year.

- Electrostatics of the GABA(A) receptor pore

- Amsterdam Modeling Suite Software Usage on Penn State’s Roar Computer Clusters

- Benchmarking Locally-Developed HPC Resources

- An optimized search algorithm for gravitational waves from post-merger remnants

- Project WiCCED ML

- Utility poles Geo-Localization and Risk Estimation using Deep Learning

- Big Data Portal For Sharing Real-world Bioinformatics Data Sets to the Public Domain

- Assembly and Taxonomic Profiling of Metagenomic Sequences using Deep Learning

- Uncertainty Quantification for Urban Air Quality Modeling in Clermont-Ferrand, France

- Computational Simulation of One-Dimensional Porous Polymers

- USD CI Improvements to Advanced Chemistry and Neuroscience Research

- Establish Computational Analysis Infrastructure for the CCRI 16-inch Telescope.

- UVM Art + AI Research Group Phase 2 (2021)

- High Performance Computing vs Quantum Computing for Neural Networks supporting Artificial Intelligence

- AMD GPU-accelerated design tools for creating novel lifeforms

- Action of Hecke operators on spaces of modular forms

- Metagenomic analysis to identify gene clusters associated with IgA production

- Mo: SEMO - Research Computing Program Development

- OK: SWOSU - Enhancing Course Curriculum using HPC

- OK: UCO - Research Cyberinfrastructure Growth

- Simulating 21st century boreal forests and fire with a state-of-the-art process-based model

- US Tax Code to Natural Language Parsable Data for Programming Languages

- Statistical Analysis of criminal cases in the United States District Court of Puerto Rico

- Simulate and design “xenobots”, on the AMD platform

- GPN Women in HPC Chapter

- Host-symbiont population genomics - analyzing the intraspecific variability of methanogenic archaeal endosymbionts of genus Methanocorpusculum hosted by a marine anaerobic ciliate Metopus sp. (Metopida)

- Using Long Short Term Memory to Obtain Particle Attributes during the Encapsulation Process of High Temperature Phase Change Materials

- Bearing Condition Monitoring using Machine Learning

- Flexible Material Handling using a Vision-Guided Industrial Robot

- Developing Portable and Reusable Computational Biology Modules

- Calculation of Polymer Hydrophobicity

- Understanding Covid-19 Pandemic through Social Media Discussion

- Investigating the Association between Environmental Characteristics and Psychological Well-Being

- Optimization and Parallelization of A Numerical Gravitational-Wave Model

- Learning dynamical systems with GPU-enabled scientific machine learning

- Delaware Microbiome Mapping and Database Development

- High throughput Python pipeline to identify Horizontal Gene Transfer

- Developing subject-specific models for the study of traumatic brain injury

- Coral Genomics: An assessment of metabolic pathways and genes influencing coral bleaching. Implications for the development of hydra as a model organism.

- Deep-learning facilitated microscopy for the dissection of durable resistance to plant disease.

- Predictive Simulation of Pulsed Electric Field Exposure Effects on Vegetable Tissues and Bacterial Suspensions

- Vector Representation with a Finance Corpus

- Developing deep learning algorithms to analyze Raman spectral data for brain cancer diagnosis

- Medical Diagnostics of Chest X-Ray Images with Deep Convolutional Neural Networks (CNN)

- Performance Benchmarks and Optimizations of a Gravitational-Wave Simulation Software

- Detecting Covid-19 Misinformation on Social Media

- Expanding computational resources for gravitational wave detection pipelines in medium-latency and beyond

- Bias and Fairness in Machine Learning: Identifying Bias

- Natural Language Processing of a Low Resource Language (Igbo, an African Language)

- Develop a data portal for the organization of molecular and imaging data

- Transformer-Models for Translating Tax Code

- Searching for Signals of Cosmic Anisotropy

- Digital Infrastructure for "The North Woods Project"

- Remote sensing data management for large-area forest mapping projects

- Gravitational-wave Inference with Waveform Uncertainty

- Bias and Fairness in Machine Learning: Mitigating Bias with unstructured data

- Novel Transformer based methods for Automatic Classification and Quantification of Stromule Dynamics from Microscopy Images

- Mapping mass and radius of compact objects to neutron star equation of state or boson star scalar potential

- A Longitude Study of Global Warming Discussion on Social Media

- Steered Molecular Dynamics Simulations on Human beta Defensin Crossing Model Bacterial Lipid Membranes

- Developing machine learning interatomic potentials for classical molecular dynamics simulations of complex perovskites

- Effects of wind-wave misalignment on air-sea momentum flux and drag coefficient

- Quantum mechanical simulation of fluorine-containing biomolecules

- Numerical simulation of earthquake cycles on oceanic transform faults

- Waveform Systematics for Black Hole Binary Mergers Models

- Does HPC Offer Advantages in Metabolic Network Modeling, Simulation and Optimization?

- Computational pipelines for the analysis of plastic-degrading genes

- Biogeochemical cycling consequences due to the impacts on the cellular response to warming oceans

- Improving earthquake detection and localization with deep learning

- An Evaluation of Methods for Handling Missing Data in Randomized Controlled Trials with Omitted Moderation Effects

- Development of personalized healthy food incentives to improve diet and cardiovascular risk

- Ultrafast Spectral Energy Distribution Modeling of Galaxies using GPUs

- Improving habitat suitability models to understand how mesophotic coral reef distribution will respond to climate change

- Statistical Analysis of criminal cases in the United States District Court of Puerto Rico

- Training Program to Study the Computation of Molecular Reaction Mechanisms using Gaussian on High Performance Computing (HPC) Systems

- Discovering the Structure, Function, and Evolution of Sirtuins and Associated Proteins in Aiptasia: A Deep Learning and Integrative Genomics Approach

- Mental Health and TikTok

- Framework for Reduction of Ambiguity in Text Data from Generative AI

- Training Program to Study Text Data Analytics on HPC Systems

- Gender GAP in bankruptcy filings

- Comparative Analysis of Foreign Direct Investments and Remittances to Five English-Speaking West African Countries Using Statistical, Machine Learning and Deep learning Models

- Consumer reaction to inflation news: simulation analysis of stress in response to the news language

- Waveform Systematics for Black Hole Binary Mergers Models (extension)

- Characterization of 3D organelle motion using curve fitting and clustering by unsupervised machine learning

- Neural network surrogate models of gravitational waveforms

Affinity Groups

ACCESS RP Integration

CSSN (Computational Science Support Network)

CCMNet Mentoring

AI Institutes Cyberinfrastructure

Campus Champions

Open Science Grid

Ask.CI Moderators

Connect CI Alliance

NSF Cyberinfrastructure Professionals