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generative-ai

Mentors and Regional Facilitators
Name Region Skills Interests
Aniruddha Maiti ACCESS CSSN, Campus Champions
Devin Bayly ACCESS CSSN, Campus Champions, CCMNet
Brandon Biggs OnDemand
David Liu CCMNet
David Ryglicki
Fan Chen ACCESS CSSN
Feseha Abebe-Akele CCMNet
Mattie Niznik Campus Champions
Dr. Nabeel Alzahrani Campus Champions, CCMNet

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Engagements

Re-engineering Lilly’s KisunlaTM into a novel antibody targeting IL13RA2 against GBM using AI-driven macromolecular modeling
Atrium Health Levine Cancer
  • Summary and objectives of the proposed experiments: 
  1. An initial research-based Ab (scFv47, discovered by our collaborator Dr. Balyasnikova) model, modeling Ab-Ag (IL13RA2 against GBM) protein complex, and identifying the binding sites (epitopes) using ROSETTA and AlphaFold2 multimer tools.
  2. Graft the CDRs of scFv (single-chain variable fragment) of antibody or Bispecific T cell engagers (BTEs) onto the template Ab, the framework of Lilly's Kisunla™ Ab drug.
  3. Modify, improve, and optimize the overall or full antibody protein structures using AI-driven macromolecule modeling (AlphaFold3).
  4. Explore single nucleotide polymorphism (SNP), pathogenic genetic variants and N-glycosylation of IL13RA2 (target) protein domain interacting with the Ab candidates among the patient population using ROSETTA software packages.
Status: In Progress

People with Expertise

David Liu

Purdue University

Programs

CCMNet

Roles

mentor, researcher/educator, research computing facilitator, CCMNet

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Expertise

Pramod Misra

Georgia Institute of Technology

Programs

ACCESS CSSN

Roles

cssn

Pramod Misra

Expertise

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Bharat Rawal

Programs

CCMNet

Roles

CCMNet

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Expertise

People with Interest

Micholas Smith

University of Tennessee, Knoxville

Programs

ACCESS CSSN

Roles

cssn, CIP

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Interests

Juan Jose Garcia Mesa

Arizona State University Campus Immersion

Programs

ACCESS CSSN

Roles

research computing facilitator

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Interests

Ana Marija Sokovic

University of Illinois at Chicago

Programs

CCMNet

Roles

CCMNet

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Interests

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