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Brian Haymore
University of Utah
mentor, research computing facilitator
Interests
acls
archiving
aws
azure
backup
bash
batch-jobs
ceph
cgroups
cifs
cloud-commercial
cloud-open-source
cloudlab
cluster-support
community-outreach
compiling
containers
data-lifecycle
data-management
distributed-computing
dtn
environment-modules
file-systems
file-transfer
firewall
gce
globus
gpfs
gpu
hardware
hpc-cluster-build
hpc-operations
jetstream
job-sizing
kubernetes
lustre
management
networking
nfs
open-ondemand
open-science-grid
openshift
openstack
os
parallelization
permissions
professional-development
project-management
provisioning
putty
resources
s3
samba
schedulers
scheduling
sciencedmz
scripting
sdn
sftp
slurm
smb
software-installation
ssh
storage
tcp
terminal-emulation-and-window-management
training
unix-environment
vpn
workforce-development
x11
Skills
acls
backup
bash
batch-jobs
ceph
cgroups
cifs
cloud-storage
cluster-support
community-outreach
compiling
cuda
dtn
environment-modules
file-systems
file-transfer
firewall
gpu
hardware
hpc-cluster-build
hpc-operations
hpc-storage
lustre
networking
nfs
os
permissions
provisioning
putty
s3
samba
schedulers
scheduling
sciencedmz
scripting
sftp
slurm
smb
software-installation
ssh
storage
tcp
terminal-emulation-and-window-management
training
unix-environment
x11
Projects
-
Data Presentation for the Living Bridge
-
Data Visualizations Using the Microsoft HoloLens
-
Light Propagation in a Temporal Focusing Microscope using Matlab
-
Unsupervised learning of topologically ordered phases of matter
-
Parallel computing for interactions between fluids and flexible structures with application to suspended longline aquaculture farms
-
Student-Developed HPC Cluster for Active Learning
-
Student-led Development of Open Source Materials for Hadoop
-
Machine learning for material property prediction
-
Individual Based Modeling of Diamondback Terrapins
-
Multiscale HPC Modeling, Tutorials and examples
-
A GIS based model for wildlife conservation in Sri Lanka
-
C++/17/14 Migration of Path Integral Quantum Monte Carlo Software
-
The foundation of terrestrial life: Inferring a total-evidence timeline of vascular plant evolution
-
Understanding Mechanical Properties of Bio-interfaces with HPC Molecular Simulations
-
Developing Computational Labs for Upper Level Physical Chemistry II Course
-
Using station data and downscaled reanalysis to assess the occurrence of extreme weather
-
BTLE Beaconing to Track Objects
-
Genetics and Big Data
-
CI Learning Resource Repository
-
Using Genetic Algorithms and Support Vector Machines in Forest Mapping
-
Large-area Enhanced Forest Inventory modeled on 3-D Airborne Laser Scanning data
-
Kerr Black Hole Gravitational Lensing
-
LOBO Fleet Monitoring
-
Grey matter density, heredity, and psychotic disorders with alcohol misuse: Moving toward new diagnostic conceptualization through biotypes.
-
Portal Development
-
UVM Art and AI Initiative
-
Onboarding Interdisciplinary Scientists to a GPU Based Cluster in Vermont
-
Using Agent Based Models on small world networks to understand disease transmission
-
Using distributed computing to equilibrate Monte Carlo simulations
-
Tracing Oceanic Pathways using High Resolution Model Output
-
Research Computing "helpdesk"
-
Transient cooling of composite spherical moving droplet at high temperature with phase change and non-homogeneous boundary conditions
-
Genome Sequencing of the Bornean Rock Frog
-
Modeling Stellar Companions in SDSS
-
Detecting and Characterizing RR Lyrae and Other Variable Stars in KELT
-
Physical Oncology
-
Modeling Atomic-Scale Processes in Crystalline Materials
-
Simulations of Stochastically Fluctuating Hyperfine Interactions
-
Incorporating Hytools into the current image processing pipeline to produce better vegetation maps that will account for radiometric signals and will parallelize workflow
-
Deep convolutional neural networks (dCNN) for image segmentation, instance labeling, and tracking.
-
Analyzing Pathogenic Clinical Isolates Genomes to Identify Horizontal Gene Transfer of Antibiotic-Resistance Genes
-
Model Mie scattering and light propagation through a high scattering medium using Monte Carlo simulation
-
Deep learning for biomedical image analysis
-
Solvation Shell and Ion Pair Species Geometries and Energetics of Magnesium and Zinc Ions
-
Optimization of Mouse Social Behavior Data Analyses Pipeline
-
Deep Learning High-Resolution Land Cover Mapping for Vermont
-
Properties of Atomic Clusters
-
Physical chemistry studies of environmental pollutant transformations: SIMION modeling of ion behavior in an electric field
-
Parallel analysis of variants in multiple bear genomes: algorithmic solutions
-
Hybrid systems and LIFE methods for Mycobacterium tuberculosis
-
Analyzing NJ COVID-19 responses with Control theory, extending a study from earlier this year.
-
Electrostatics of the GABA(A) receptor pore
-
Amsterdam Modeling Suite Software Usage on Penn State’s Roar Computer Clusters
-
Benchmarking Locally-Developed HPC Resources
-
An optimized search algorithm for gravitational waves from post-merger remnants
-
Project WiCCED ML
-
Utility poles Geo-Localization and Risk Estimation using Deep Learning
-
Big Data Portal For Sharing Real-world Bioinformatics Data Sets to the Public Domain
-
Assembly and Taxonomic Profiling of Metagenomic Sequences using Deep Learning
-
Uncertainty Quantification for Urban Air Quality Modeling in Clermont-Ferrand, France
-
Computational Simulation of One-Dimensional Porous Polymers
-
USD CI Improvements to Advanced Chemistry and Neuroscience Research
-
Establish Computational Analysis Infrastructure for the CCRI 16-inch Telescope.
-
UVM Art + AI Research Group Phase 2 (2021)
-
High Performance Computing vs Quantum Computing for Neural Networks supporting Artificial Intelligence
-
AMD GPU-accelerated design tools for creating novel lifeforms
-
Action of Hecke operators on spaces of modular forms
-
Metagenomic analysis to identify gene clusters associated with IgA production
-
Mo: SEMO - Research Computing Program Development
-
OK: SWOSU - Enhancing Course Curriculum using HPC
-
OK: UCO - Research Cyberinfrastructure Growth
-
Simulating 21st century boreal forests and fire with a state-of-the-art process-based model
-
US Tax Code to Natural Language Parsable Data for Programming Languages
-
Statistical Analysis of criminal cases in the United States District Court of Puerto Rico
-
Simulate and design “xenobots”, on the AMD platform
-
GPN Women in HPC Chapter
-
Host-symbiont population genomics - analyzing the intraspecific variability of methanogenic archaeal endosymbionts of genus Methanocorpusculum hosted by a marine anaerobic ciliate Metopus sp. (Metopida)
-
GP-ARGO
-
Using Long Short Term Memory to Obtain Particle Attributes during the Encapsulation Process of High Temperature Phase Change Materials
-
Bearing Condition Monitoring using Machine Learning
-
Flexible Material Handling using a Vision-Guided Industrial Robot
-
Developing Portable and Reusable Computational Biology Modules
-
Calculation of Polymer Hydrophobicity
-
Understanding Covid-19 Pandemic through Social Media Discussion
-
Investigating the Association between Environmental Characteristics and Psychological Well-Being
-
Optimization and Parallelization of A Numerical Gravitational-Wave Model
-
Learning dynamical systems with GPU-enabled scientific machine learning
-
Delaware Microbiome Mapping and Database Development
-
High throughput Python pipeline to identify Horizontal Gene Transfer
-
Developing subject-specific models for the study of traumatic brain injury
-
Coral Genomics: An assessment of metabolic pathways and genes influencing coral bleaching. Implications for the development of hydra as a model organism.
-
Deep-learning facilitated microscopy for the dissection of durable resistance to plant disease.
-
Predictive Simulation of Pulsed Electric Field Exposure Effects on Vegetable Tissues and Bacterial Suspensions
-
Vector Representation with a Finance Corpus
-
Developing deep learning algorithms to analyze Raman spectral data for brain cancer diagnosis
-
Medical Diagnostics of Chest X-Ray Images with Deep Convolutional Neural Networks (CNN)
-
Performance Benchmarks and Optimizations of a Gravitational-Wave Simulation Software
-
Detecting Covid-19 Misinformation on Social Media
-
Expanding computational resources for gravitational wave detection pipelines in medium-latency and beyond
-
Bias and Fairness in Machine Learning: Identifying Bias
-
Natural Language Processing of a Low Resource Language (Igbo, an African Language)
-
Develop a data portal for the organization of molecular and imaging data
-
Transformer-Models for Translating Tax Code
-
Searching for Signals of Cosmic Anisotropy
-
Digital Infrastructure for "The North Woods Project"
-
Remote sensing data management for large-area forest mapping projects
-
Gravitational-wave Inference with Waveform Uncertainty
-
Bias and Fairness in Machine Learning: Mitigating Bias with unstructured data
-
Novel Transformer based methods for Automatic Classification and Quantification of Stromule Dynamics from Microscopy Images
-
Mapping mass and radius of compact objects to neutron star equation of state or boson star scalar potential
-
A Longitude Study of Global Warming Discussion on Social Media
-
Steered Molecular Dynamics Simulations on Human beta Defensin Crossing Model Bacterial Lipid Membranes
-
Developing machine learning interatomic potentials for classical molecular dynamics simulations of complex perovskites
-
Effects of wind-wave misalignment on air-sea momentum flux and drag coefficient
-
Quantum mechanical simulation of fluorine-containing biomolecules
-
Numerical simulation of earthquake cycles on oceanic transform faults
-
Waveform Systematics for Black Hole Binary Mergers Models
-
Does HPC Offer Advantages in Metabolic Network Modeling, Simulation and Optimization?
-
Computational pipelines for the analysis of plastic-degrading genes
-
Biogeochemical cycling consequences due to the impacts on the cellular response to warming oceans
-
Improving earthquake detection and localization with deep learning
-
An Evaluation of Methods for Handling Missing Data in Randomized Controlled Trials with Omitted Moderation Effects
-
Development of personalized healthy food incentives to improve diet and cardiovascular risk
-
Ultrafast Spectral Energy Distribution Modeling of Galaxies using GPUs
-
Improving habitat suitability models to understand how mesophotic coral reef distribution will respond to climate change
-
Statistical Analysis of criminal cases in the United States District Court of Puerto Rico
-
Training Program to Study the Computation of Molecular Reaction Mechanisms using Gaussian on High Performance Computing (HPC) Systems
-
Discovering the Structure, Function, and Evolution of Sirtuins and Associated Proteins in Aiptasia: A Deep Learning and Integrative Genomics Approach
-
Mental Health and TikTok
-
Framework for Reduction of Ambiguity in Text Data from Generative AI
-
Training Program to Study Text Data Analytics on HPC Systems
-
Gender GAP in bankruptcy filings
-
Comparative Analysis of Foreign Direct Investments and Remittances to Five English-Speaking West African Countries Using Statistical, Machine Learning and Deep learning Models
-
Consumer reaction to inflation news: simulation analysis of stress in response to the news language
-
Waveform Systematics for Black Hole Binary Mergers Models (extension)
-
Characterization of 3D organelle motion using curve fitting and clustering by unsupervised machine learning
-
Neural network surrogate models of gravitational waveforms
-
Data Presentation for the Living Bridge
-
Data Visualizations Using the Microsoft HoloLens
-
Light Propagation in a Temporal Focusing Microscope using Matlab
-
Unsupervised learning of topologically ordered phases of matter
-
Parallel computing for interactions between fluids and flexible structures with application to suspended longline aquaculture farms
-
Student-Developed HPC Cluster for Active Learning
-
Student-led Development of Open Source Materials for Hadoop
-
Machine learning for material property prediction
-
Individual Based Modeling of Diamondback Terrapins
-
Multiscale HPC Modeling, Tutorials and examples
-
A GIS based model for wildlife conservation in Sri Lanka
-
C++/17/14 Migration of Path Integral Quantum Monte Carlo Software
-
The foundation of terrestrial life: Inferring a total-evidence timeline of vascular plant evolution
-
Understanding Mechanical Properties of Bio-interfaces with HPC Molecular Simulations
-
Developing Computational Labs for Upper Level Physical Chemistry II Course
-
Using station data and downscaled reanalysis to assess the occurrence of extreme weather
-
BTLE Beaconing to Track Objects
-
Genetics and Big Data
-
CI Learning Resource Repository
-
Using Genetic Algorithms and Support Vector Machines in Forest Mapping
-
Large-area Enhanced Forest Inventory modeled on 3-D Airborne Laser Scanning data
-
Kerr Black Hole Gravitational Lensing
-
LOBO Fleet Monitoring
-
Grey matter density, heredity, and psychotic disorders with alcohol misuse: Moving toward new diagnostic conceptualization through biotypes.
-
Portal Development
-
UVM Art and AI Initiative
-
Onboarding Interdisciplinary Scientists to a GPU Based Cluster in Vermont
-
Using Agent Based Models on small world networks to understand disease transmission
-
Using distributed computing to equilibrate Monte Carlo simulations
-
Tracing Oceanic Pathways using High Resolution Model Output
-
Research Computing "helpdesk"
-
Transient cooling of composite spherical moving droplet at high temperature with phase change and non-homogeneous boundary conditions
-
Genome Sequencing of the Bornean Rock Frog
-
Modeling Stellar Companions in SDSS
-
Detecting and Characterizing RR Lyrae and Other Variable Stars in KELT
-
Physical Oncology
-
Modeling Atomic-Scale Processes in Crystalline Materials
-
Simulations of Stochastically Fluctuating Hyperfine Interactions
-
Incorporating Hytools into the current image processing pipeline to produce better vegetation maps that will account for radiometric signals and will parallelize workflow
-
Deep convolutional neural networks (dCNN) for image segmentation, instance labeling, and tracking.
-
Analyzing Pathogenic Clinical Isolates Genomes to Identify Horizontal Gene Transfer of Antibiotic-Resistance Genes
-
Model Mie scattering and light propagation through a high scattering medium using Monte Carlo simulation
-
Deep learning for biomedical image analysis
-
Solvation Shell and Ion Pair Species Geometries and Energetics of Magnesium and Zinc Ions
-
Optimization of Mouse Social Behavior Data Analyses Pipeline
-
Deep Learning High-Resolution Land Cover Mapping for Vermont
-
Properties of Atomic Clusters
-
Physical chemistry studies of environmental pollutant transformations: SIMION modeling of ion behavior in an electric field
-
Parallel analysis of variants in multiple bear genomes: algorithmic solutions
-
Hybrid systems and LIFE methods for Mycobacterium tuberculosis
-
Analyzing NJ COVID-19 responses with Control theory, extending a study from earlier this year.
-
Electrostatics of the GABA(A) receptor pore
-
Amsterdam Modeling Suite Software Usage on Penn State’s Roar Computer Clusters
-
Benchmarking Locally-Developed HPC Resources
-
An optimized search algorithm for gravitational waves from post-merger remnants
-
Project WiCCED ML
-
Utility poles Geo-Localization and Risk Estimation using Deep Learning
-
Big Data Portal For Sharing Real-world Bioinformatics Data Sets to the Public Domain
-
Assembly and Taxonomic Profiling of Metagenomic Sequences using Deep Learning
-
Uncertainty Quantification for Urban Air Quality Modeling in Clermont-Ferrand, France
-
Computational Simulation of One-Dimensional Porous Polymers
-
USD CI Improvements to Advanced Chemistry and Neuroscience Research
-
Establish Computational Analysis Infrastructure for the CCRI 16-inch Telescope.
-
UVM Art + AI Research Group Phase 2 (2021)
-
High Performance Computing vs Quantum Computing for Neural Networks supporting Artificial Intelligence
-
AMD GPU-accelerated design tools for creating novel lifeforms
-
Action of Hecke operators on spaces of modular forms
-
Metagenomic analysis to identify gene clusters associated with IgA production
-
Mo: SEMO - Research Computing Program Development
-
OK: SWOSU - Enhancing Course Curriculum using HPC
-
OK: UCO - Research Cyberinfrastructure Growth
-
Simulating 21st century boreal forests and fire with a state-of-the-art process-based model
-
US Tax Code to Natural Language Parsable Data for Programming Languages
-
Statistical Analysis of criminal cases in the United States District Court of Puerto Rico
-
Simulate and design “xenobots”, on the AMD platform
-
GPN Women in HPC Chapter
-
Host-symbiont population genomics - analyzing the intraspecific variability of methanogenic archaeal endosymbionts of genus Methanocorpusculum hosted by a marine anaerobic ciliate Metopus sp. (Metopida)
-
GP-ARGO
-
Using Long Short Term Memory to Obtain Particle Attributes during the Encapsulation Process of High Temperature Phase Change Materials
-
Bearing Condition Monitoring using Machine Learning
-
Flexible Material Handling using a Vision-Guided Industrial Robot
-
Developing Portable and Reusable Computational Biology Modules
-
Calculation of Polymer Hydrophobicity
-
Understanding Covid-19 Pandemic through Social Media Discussion
-
Investigating the Association between Environmental Characteristics and Psychological Well-Being
-
Optimization and Parallelization of A Numerical Gravitational-Wave Model
-
Learning dynamical systems with GPU-enabled scientific machine learning
-
Delaware Microbiome Mapping and Database Development
-
High throughput Python pipeline to identify Horizontal Gene Transfer
-
Developing subject-specific models for the study of traumatic brain injury
-
Coral Genomics: An assessment of metabolic pathways and genes influencing coral bleaching. Implications for the development of hydra as a model organism.
-
Deep-learning facilitated microscopy for the dissection of durable resistance to plant disease.
-
Predictive Simulation of Pulsed Electric Field Exposure Effects on Vegetable Tissues and Bacterial Suspensions
-
Vector Representation with a Finance Corpus
-
Developing deep learning algorithms to analyze Raman spectral data for brain cancer diagnosis
-
Medical Diagnostics of Chest X-Ray Images with Deep Convolutional Neural Networks (CNN)
-
Performance Benchmarks and Optimizations of a Gravitational-Wave Simulation Software
-
Detecting Covid-19 Misinformation on Social Media
-
Expanding computational resources for gravitational wave detection pipelines in medium-latency and beyond
-
Bias and Fairness in Machine Learning: Identifying Bias
-
Natural Language Processing of a Low Resource Language (Igbo, an African Language)
-
Develop a data portal for the organization of molecular and imaging data
-
Transformer-Models for Translating Tax Code
-
Searching for Signals of Cosmic Anisotropy
-
Digital Infrastructure for "The North Woods Project"
-
Remote sensing data management for large-area forest mapping projects
-
Gravitational-wave Inference with Waveform Uncertainty
-
Bias and Fairness in Machine Learning: Mitigating Bias with unstructured data
-
Novel Transformer based methods for Automatic Classification and Quantification of Stromule Dynamics from Microscopy Images
-
Mapping mass and radius of compact objects to neutron star equation of state or boson star scalar potential
-
A Longitude Study of Global Warming Discussion on Social Media
-
Steered Molecular Dynamics Simulations on Human beta Defensin Crossing Model Bacterial Lipid Membranes
-
Developing machine learning interatomic potentials for classical molecular dynamics simulations of complex perovskites
-
Effects of wind-wave misalignment on air-sea momentum flux and drag coefficient
-
Quantum mechanical simulation of fluorine-containing biomolecules
-
Numerical simulation of earthquake cycles on oceanic transform faults
-
Waveform Systematics for Black Hole Binary Mergers Models
-
Does HPC Offer Advantages in Metabolic Network Modeling, Simulation and Optimization?
-
Computational pipelines for the analysis of plastic-degrading genes
-
Biogeochemical cycling consequences due to the impacts on the cellular response to warming oceans
-
Improving earthquake detection and localization with deep learning
-
An Evaluation of Methods for Handling Missing Data in Randomized Controlled Trials with Omitted Moderation Effects
-
Development of personalized healthy food incentives to improve diet and cardiovascular risk
-
Ultrafast Spectral Energy Distribution Modeling of Galaxies using GPUs
-
Improving habitat suitability models to understand how mesophotic coral reef distribution will respond to climate change
-
Statistical Analysis of criminal cases in the United States District Court of Puerto Rico
-
Training Program to Study the Computation of Molecular Reaction Mechanisms using Gaussian on High Performance Computing (HPC) Systems
-
Discovering the Structure, Function, and Evolution of Sirtuins and Associated Proteins in Aiptasia: A Deep Learning and Integrative Genomics Approach
-
Mental Health and TikTok
-
Framework for Reduction of Ambiguity in Text Data from Generative AI
-
Training Program to Study Text Data Analytics on HPC Systems
-
Gender GAP in bankruptcy filings
-
Comparative Analysis of Foreign Direct Investments and Remittances to Five English-Speaking West African Countries Using Statistical, Machine Learning and Deep learning Models
-
Consumer reaction to inflation news: simulation analysis of stress in response to the news language
-
Waveform Systematics for Black Hole Binary Mergers Models (extension)
-
Characterization of 3D organelle motion using curve fitting and clustering by unsupervised machine learning
-
Neural network surrogate models of gravitational waveforms